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  "Authors@R": "person(\"Rodrigo Fonseca\", \"Villa\", email = \"rodrigo03.villa@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0005-2938-2270\"))",
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  "Description": "Computes phylogenetic distances between any two taxa using\nhierarchical lineage data retrieved from The Taxonomicon\n<http://taxonomicon.taxonomy.nl>, a comprehensive curated\nclassification of all life based on Systema Naturae 2000\n(Brands, 1989 <http://taxonomicon.taxonomy.nl>). Given any two\ntaxon names, retrieves their full lineages, identifies the most\nrecent common ancestor (MRCA), and computes a dissimilarity\nindex based on lineage depth. Outputs native dist objects,\nenabling direct integration with the R statistical ecosystem\nfor hierarchical clustering, principal coordinate analysis\n(PCoA), and multivariate ecological analyses. Supports\nindividual distance queries, pairwise distance matrices, clade\nfiltering, and lineage utilities.",
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    "load_cache",
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    "shared_clades",
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    "taxo_distance",
    "taxo_heatmap",
    "taxo_ordinate",
    "taxo_path",
    "taxo_search"
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      "title": "Reference Taxonomic Dataset (taxobase)",
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      "fields": [],
      "table": false,
      "tojson": true
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      "page": "taxodist-package",
      "title": "taxodist: Taxonomic Distance and Phylogenetic Lineage Computation",
      "topics": [
        "taxodist-package",
        "taxodist"
      ]
    },
    {
      "page": "cache_info",
      "title": "Inspect the current taxodist lineage cache",
      "topics": [
        "cache_info"
      ]
    },
    {
      "page": "check_coverage",
      "title": "Check whether a taxon is covered by The Taxonomicon",
      "topics": [
        "check_coverage"
      ]
    },
    {
      "page": "clear_cache",
      "title": "Clear the taxodist lineage cache",
      "topics": [
        "clear_cache"
      ]
    },
    {
      "page": "closest_relative",
      "title": "Find the closest relative of a taxon among a set of candidates",
      "topics": [
        "closest_relative"
      ]
    },
    {
      "page": "compare_lineages",
      "title": "Compare lineages of two taxa side by side",
      "topics": [
        "compare_lineages"
      ]
    },
    {
      "page": "distance_matrix",
      "title": "Compute pairwise taxonomic distances for a set of taxa",
      "topics": [
        "distance_matrix"
      ]
    },
    {
      "page": "filter_clade",
      "title": "Filter a vector of taxa to those belonging to a given clade",
      "topics": [
        "filter_clade"
      ]
    },
    {
      "page": "focal_distances",
      "title": "Compute distances from a focal taxon to a community of taxa",
      "topics": [
        "focal_distances"
      ]
    },
    {
      "page": "get_lineage",
      "title": "Retrieve the full taxonomic lineage of a taxon by name",
      "topics": [
        "get_lineage"
      ]
    },
    {
      "page": "get_lineage_by_id",
      "title": "Retrieve the full taxonomic lineage of a taxon",
      "topics": [
        "get_lineage_by_id"
      ]
    },
    {
      "page": "get_taxonomicon_id",
      "title": "Find the Taxonomicon ID for a taxon name",
      "topics": [
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    },
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      "title": "Test whether one taxon is nested within another",
      "topics": [
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      ]
    },
    {
      "page": "lineage_depth",
      "title": "Get the lineage depth of a taxon",
      "topics": [
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      ]
    },
    {
      "page": "load_cache",
      "title": "Load a previously saved taxodist cache from disk",
      "topics": [
        "load_cache"
      ]
    },
    {
      "page": "mrca",
      "title": "Compute the most recent common ancestor of two taxa",
      "topics": [
        "mrca"
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    },
    {
      "page": "plot.taxodist_cluster",
      "title": "Plot method for taxodist_cluster objects",
      "topics": [
        "plot.taxodist_cluster"
      ]
    },
    {
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      "title": "Plot method for taxodist_ord objects",
      "topics": [
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      "page": "print.taxodist_focal",
      "title": "Print method for taxodist_focal objects",
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    },
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      "title": "Print method for taxodist_path objects",
      "topics": [
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      "check": "NOTE",
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  ]
}